Are you talking about capacity (how much energy is stored in a battery)? This is roughly the thing that tells you how long a circuit will operate when using that battery.
Or are you talking about the maximum current that can be drawn from a battery (the maximum instantaneous power)?
I suspect it is the former, although current (and the units you use) reflect the latter.
The appropriate units of measure are mAh (milliamp hours). This is a unit that combines the rate of discharge (mA) with the time the battery will last (hours).
In practice, this is done for a specific current, say 900mAh at 25 mA. If you look
here you will notice that as the current increases, the effective capacity of the battery tends to drop. This is partially caused by power being lost in heating the battery.
However, you are perfectly correct in that placing batteries in series causes the total capacity in mAh to be unchanged (placing them in parallel allows you to add them -- but at the expense of not being able to add the voltage).
Your conclusion is probably true. The 6xAA cells will last around twice the length of time that the single 9V cell will. In fact they will probably last longer than that as the current at which they are rated to give that capacity is probably higher than the one used to calculate the capacity of the 9V battery. The same relationship shown above means that the capacity will be higher at a lower current (although not dramatically higher).
If the batteries are the same type (e.g. alkaline) then the difference in volume between 6 AA cells and 1 9V battery is also indicative of their relative capacity. In fact, if you open up some 9V batteries you'll find they have 6 AAAA cells inside.